MLOC_5747 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains7.5858324.680920.670616.8174
LEAShoots from the seedlings (10 cm shoot stage)21.053220.523920.933816.7189
INF1Young developing inflorescences (5mm)27.309928.359628.092120.589
INF2Developing inflorescences (1-1.5 cm)27.636329.928730.944928.1838
ROORoots from the seedlings (10 cm shoot stage)9.2756219.868412.433719.1774
NODDeveloping tillers at six leaf stage, 3rd internode10.212312.75811.991638.203
CAR5Developing grain, bracts removed (5 DPA)27.947425.183127.648722.5679
CAR15Developing grain, bracts removed (15 DPA)28.350525.024126.219752.219



CDS Structure of MLOC_5747






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_5747.2
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
MLOC_5747.2CUST_13696_PI427708080AvailableAvailablecontig_136635 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os03g11470.1 +1 0.0 1588 797/861 (93%) 13103.m01294 protein DEAD/DEAH box helicase domain containing protein, expressed
TAIR PP10 AT5G61140.2 +1 0.0 1726 841/1039 (81%) U5 small nuclear ribonucleoprotein helicase | chr5:24589999-24603311 FORWARD LENGTH=2157