MLOC_57457 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains0.115756000
LEAShoots from the seedlings (10 cm shoot stage)0000
INF1Young developing inflorescences (5mm)0.8344750.5804560.4232040.358947
INF2Developing inflorescences (1-1.5 cm)0.3722780.8619190.05089340.310422
ROORoots from the seedlings (10 cm shoot stage)000.08424750.00988415
NODDeveloping tillers at six leaf stage, 3rd internode0000
CAR5Developing grain, bracts removed (5 DPA)0.3751330.1316850.2459230.00185277
CAR15Developing grain, bracts removed (15 DPA)1.41403e-05000



CDS Structure of MLOC_57457






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_57457.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
MLOC_57457.1CUST_13694_PI427708080AvailableAvailablecontig_41765 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os10g41740.1 -2 0.0 624 358/512 (70%) 13110.m03898 protein pentatricopeptide, putative, expressed
TAIR PP10 AT2G21090.1 -2 3e-103 333 168/421 (40%) Pentatricopeptide repeat (PPR-like) superfamily protein | chr2:9045695-9047488 REVERSE LENGTH=597