MLOC_57456 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains2.052372.777552.377262.41204
LEAShoots from the seedlings (10 cm shoot stage)4.598945.397415.736994.36163
INF1Young developing inflorescences (5mm)11.576411.024110.60118.85374
INF2Developing inflorescences (1-1.5 cm)11.953310.563711.685511.6318
ROORoots from the seedlings (10 cm shoot stage)1.740952.967112.877873.20868
NODDeveloping tillers at six leaf stage, 3rd internode2.087772.345855.017449.00784
CAR5Developing grain, bracts removed (5 DPA)5.277035.297295.482224.84998
CAR15Developing grain, bracts removed (15 DPA)1.21391.189321.176652.59424



CDS Structure of MLOC_57456






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_57456.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
MLOC_57456.1CUST_13693_PI427708080AvailableAvailablecontig_41765 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os10g41770.1 -3 0.0 939 496/709 (70%) 13110.m03904 protein expressed protein
TAIR PP10 AT1G78540.1 -3 7e-144 444 249/634 (39%) | Symbols: SHB, ATSHB, STATLB | SH2 domain protein B | chr1:29541244-29544574 REVERSE LENGTH=668