MLOC_57435 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains0000
LEAShoots from the seedlings (10 cm shoot stage)0000
INF1Young developing inflorescences (5mm)0000
INF2Developing inflorescences (1-1.5 cm)0.2282390.3928810.5413740.414187
ROORoots from the seedlings (10 cm shoot stage)0000
NODDeveloping tillers at six leaf stage, 3rd internode0000
CAR5Developing grain, bracts removed (5 DPA)2.607272.692613.19292.82205
CAR15Developing grain, bracts removed (15 DPA)0.1070680.1833180.1058130.326318



CDS Structure of MLOC_57435






Members of Gene Cluster

This cluster has a confidence assignment of non-High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_57435.2
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
MLOC_57435.2CUST_7913_PI427708083AvailableAvailablecontig_41750 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os09g27060.1 +3 0.0 587 308/371 (83%) 13109.m02626 protein SNF2 family N-terminal domain containing protein, expressed
TAIR PP10 AT5G66750.1 +3 5e-149 447 241/373 (65%) | Symbols: DDM1, CHR01, CHR1, CHA1, SOM4, SOM1, ATDDM1 | chromatin remodeling 1 | chr5:26649050-26652869 FORWARD LENGTH=764