MLOC_57434 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains3.720853.532293.918234.24741
LEAShoots from the seedlings (10 cm shoot stage)16.24025.395324.597427.26487
INF1Young developing inflorescences (5mm)1.20670.3258520.2308920.53379
INF2Developing inflorescences (1-1.5 cm)0.8645880.6723671.159681.1583
ROORoots from the seedlings (10 cm shoot stage)1.889892.98322.691653.95181
NODDeveloping tillers at six leaf stage, 3rd internode13.124411.27755.6686527.2359
CAR5Developing grain, bracts removed (5 DPA)15.508315.871110.680517.4125
CAR15Developing grain, bracts removed (15 DPA)1.336221.381771.279223.95857



CDS Structure of MLOC_57434






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_57434.2
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
AK357024NoneNoneNoneNone
MLOC_57434.2CUST_3768_PI427708080AvailableAvailablecontig_41749 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os03g58350.1 -2 4e-54 182 99/139 (71%) 13103.m06410 protein OsIAA14 - Auxin-responsive Aux/IAA gene family member, expressed
TAIR PP10 AT1G04240.1 -2 2e-33 125 68/140 (49%) | Symbols: SHY2, IAA3 | AUX/IAA transcriptional regulator family protein | chr1:1128564-1129319 REVERSE LENGTH=189