MLOC_57427 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains0.03443080.1135120.1280240.120714
LEAShoots from the seedlings (10 cm shoot stage)0000
INF1Young developing inflorescences (5mm)0000
INF2Developing inflorescences (1-1.5 cm)0.107695000.131533
ROORoots from the seedlings (10 cm shoot stage)0.0607494000.0357383
NODDeveloping tillers at six leaf stage, 3rd internode0000
CAR5Developing grain, bracts removed (5 DPA)0.5304460.6968980.4348640.58355
CAR15Developing grain, bracts removed (15 DPA)163.057180.615149.261413.781



CDS Structure of MLOC_57427






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_57427.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
AK375762NoneNoneNoneNone
MLOC_57427.1CUST_3765_PI427708080AvailableAvailablecontig_41741 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os01g29840.1 +1 3e-61 207 106/187 (57%) 13101.m03094 protein no apical meristem protein, putative, expressed
TAIR PP10 AT5G39610.1 +1 5e-60 202 108/205 (53%) | Symbols: ATNAC2, ORE1, ANAC092, ATNAC6, NAC2, NAC6 | NAC domain containing protein 6 | chr5:15858591-15859650 REVERSE LENGTH=285