MLOC_57406 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains198.734142.783159.395154.266
LEAShoots from the seedlings (10 cm shoot stage)88.204477.4625101.24871.4193
INF1Young developing inflorescences (5mm)80.500179.984488.537368.336
INF2Developing inflorescences (1-1.5 cm)51.94456.285760.895658.5781
ROORoots from the seedlings (10 cm shoot stage)177.191126.855126.498150.417
NODDeveloping tillers at six leaf stage, 3rd internode196.865157.566142.283452.132
CAR5Developing grain, bracts removed (5 DPA)80.815579.931579.737775.365
CAR15Developing grain, bracts removed (15 DPA)42.199343.949443.85196.2535



CDS Structure of MLOC_57406






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_57406.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
AK366769NoneNoneNoneNone
MLOC_57406.1CUST_3757_PI427708080AvailableAvailablecontig_41718 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os01g62244.1 +1 3e-96 288 145/153 (95%) 13101.m06659 protein ubiquitin-conjugating enzyme, putative, expressed
TAIR PP10 AT3G46460.1 +1 1e-88 268 131/152 (86%) | Symbols: UBC13 | ubiquitin-conjugating enzyme 13 | chr3:17096120-17097315 REVERSE LENGTH=166