MLOC_57388 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains21.873118.146616.505217.9834
LEAShoots from the seedlings (10 cm shoot stage)18.356425.44729.945818.7741
INF1Young developing inflorescences (5mm)21.02422.149920.128418.102
INF2Developing inflorescences (1-1.5 cm)14.646413.341712.223414.8476
ROORoots from the seedlings (10 cm shoot stage)8.1509710.30159.4890710.3883
NODDeveloping tillers at six leaf stage, 3rd internode2.522441.771326.176847.45499
CAR5Developing grain, bracts removed (5 DPA)14.953413.437814.448713.7473
CAR15Developing grain, bracts removed (15 DPA)5.89735.639026.5530314.4511



CDS Structure of MLOC_57388






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_57388.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
AK356390NoneNoneNoneNone
MLOC_57388.1CUST_3755_PI427708080AvailableAvailablecontig_41701 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os01g49890.1 -2 0.0 884 458/525 (87%) 13101.m05193 protein threonine synthase, chloroplast precursor, putative, expressed
TAIR PP10 AT4G29840.1 -2 0.0 708 366/477 (77%) | Symbols: MTO2, TS | Pyridoxal-5-phosphate-dependent enzyme family protein | chr4:14599434-14601014 REVERSE LENGTH=526