MLOC_57380 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains0000
LEAShoots from the seedlings (10 cm shoot stage)0000
INF1Young developing inflorescences (5mm)0000
INF2Developing inflorescences (1-1.5 cm)0.06714380.1276190.08562260.109434
ROORoots from the seedlings (10 cm shoot stage)0000
NODDeveloping tillers at six leaf stage, 3rd internode0000
CAR5Developing grain, bracts removed (5 DPA)1.043160.5943170.9415390.80777
CAR15Developing grain, bracts removed (15 DPA)0000



CDS Structure of MLOC_57380






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_57380.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
MLOC_57380.1CUST_13686_PI427708080AvailableAvailablecontig_41696 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os11g13770.1 -3 2e-31 117 55/112 (49%) 13111.m01398 protein conserved hypothetical protein
TAIR PP10 AT1G02816.1 -3 3e-26 102 50/115 (43%) Protein of unknown function, DUF538 | chr1:621637-622137 FORWARD LENGTH=166