MLOC_57369 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains91.0685110.955108.77112.294
LEAShoots from the seedlings (10 cm shoot stage)75.515646.177438.381849.9376
INF1Young developing inflorescences (5mm)215.112203.751185.412176.004
INF2Developing inflorescences (1-1.5 cm)152.368169.13166.182186.371
ROORoots from the seedlings (10 cm shoot stage)39.733491.6986.5807115.577
NODDeveloping tillers at six leaf stage, 3rd internode24.918427.121935.8747115.365
CAR5Developing grain, bracts removed (5 DPA)131.642136.631146.13142.546
CAR15Developing grain, bracts removed (15 DPA)45.370941.057139.463199.3393



CDS Structure of MLOC_57369






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_57369.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
MLOC_57369.1CUST_13684_PI427708080AvailableAvailablecontig_41692 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os06g34690.1 -2 0.0 951 516/558 (92%) 13106.m03583 protein T-complex protein, putative, expressed
TAIR PP10 AT5G26360.1 -2 0.0 899 467/556 (84%) TCP-1/cpn60 chaperonin family protein | chr5:9255561-9258891 REVERSE LENGTH=555