MLOC_57360 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains10.522212.412110.955316.4979
LEAShoots from the seedlings (10 cm shoot stage)4.02140.5133130.6398231.5473
INF1Young developing inflorescences (5mm)35.936632.792425.635634.4129
INF2Developing inflorescences (1-1.5 cm)20.896427.882719.71237.289
ROORoots from the seedlings (10 cm shoot stage)2.112786.140176.257711.8692
NODDeveloping tillers at six leaf stage, 3rd internode0.1458130.1607520.04176740.636716
CAR5Developing grain, bracts removed (5 DPA)7.353428.026717.9430311.5249
CAR15Developing grain, bracts removed (15 DPA)0.4588910.3260070.7242311.45415



CDS Structure of MLOC_57360






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_57360.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
AK354886NoneNoneNoneNone
MLOC_57360.1CUST_3751_PI427708080AvailableAvailablecontig_41680 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os02g15810.1 -1 3e-151 452 338/542 (62%) 13102.m01762 protein HMG1/2, putative, expressed
TAIR PP10 AT4G23800.2 -1 2e-116 360 233/429 (54%) HMG (high mobility group) box protein | chr4:12390228-12392516 FORWARD LENGTH=450