MLOC_57344 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains502.087340.671313.192435.084
LEAShoots from the seedlings (10 cm shoot stage)251.232145.935182.965184.776
INF1Young developing inflorescences (5mm)652.828647.336724.589647.469
INF2Developing inflorescences (1-1.5 cm)666.788629.975715.947829.844
ROORoots from the seedlings (10 cm shoot stage)300.465357.352351.801518.084
NODDeveloping tillers at six leaf stage, 3rd internode73.1657105.178189.832450.026
CAR5Developing grain, bracts removed (5 DPA)370.306370.052363.424422.649
CAR15Developing grain, bracts removed (15 DPA)202.356177.174212.399518.17



CDS Structure of MLOC_57344






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_57344.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
AK249398.1NoneNoneNoneNone
MLOC_57344.1CUST_3748_PI427708080AvailableAvailablecontig_41663 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os05g49030.1 +3 5e-124 356 169/178 (95%) 13105.m05238 protein 60S ribosomal protein L18a, putative, expressed
TAIR PP10 AT2G34480.1 +3 7e-117 337 162/178 (91%) Ribosomal protein L18ae/LX family protein | chr2:14532916-14534161 REVERSE LENGTH=178