MLOC_57330 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains9.88037.777198.467518.26063
LEAShoots from the seedlings (10 cm shoot stage)13.23523.187113.494675.29493
INF1Young developing inflorescences (5mm)9.0985911.69529.863199.023
INF2Developing inflorescences (1-1.5 cm)8.786019.747598.0810310.0339
ROORoots from the seedlings (10 cm shoot stage)12.827212.346614.080612.8095
NODDeveloping tillers at six leaf stage, 3rd internode27.752416.86417.54743.0308
CAR5Developing grain, bracts removed (5 DPA)9.042579.753619.804879.44594
CAR15Developing grain, bracts removed (15 DPA)1.041681.681670.7996743.09406



CDS Structure of MLOC_57330






Members of Gene Cluster

This cluster has a confidence assignment of non-High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_57330.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
MLOC_57330.1CUST_12803_PI427708083AvailableAvailablecontig_41652 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os04g49410.1 +2 1e-91 280 127/138 (92%) 13104.m05042 protein expansin precursor, putative, expressed
TAIR PP10 AT3G03220.1 +2 4e-64 208 93/134 (69%) | Symbols: ATEXPA13, EXP13, ATEXP13, ATHEXP ALPHA 1.22, EXPA13 | expansin A13 | chr3:742655-743975 REVERSE LENGTH=266