MLOC_57302 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains1.133981.904491.699561.7508
LEAShoots from the seedlings (10 cm shoot stage)0.8779670.8861021.220770.958812
INF1Young developing inflorescences (5mm)2.591582.701472.948732.33576
INF2Developing inflorescences (1-1.5 cm)3.544613.061963.493263.82671
ROORoots from the seedlings (10 cm shoot stage)0.5894851.455550.9484021.76941
NODDeveloping tillers at six leaf stage, 3rd internode0.3021210.297830.4127081.27757
CAR5Developing grain, bracts removed (5 DPA)1.442041.399451.532961.51685
CAR15Developing grain, bracts removed (15 DPA)0.425060.322720.6263740.99411



CDS Structure of MLOC_57302






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_57302.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
MLOC_57302.1CUST_13671_PI427708080AvailableAvailablecontig_41626 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os02g40450.1 +3 0.0 799 432/619 (70%) 13102.m04507 protein DEAD/DEAH box helicase domain containing protein, expressed
TAIR PP10 AT3G27730.1 +3 4e-132 425 245/567 (43%) | Symbols: RCK, MER3 | ATP binding;ATP-dependent helicases;DNA helicases | chr3:10273952-10280213 REVERSE LENGTH=1133