MLOC_57298 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains76.581263.826162.618370.0073
LEAShoots from the seedlings (10 cm shoot stage)50.30536.405542.933138.1736
INF1Young developing inflorescences (5mm)61.369858.307254.983450.9923
INF2Developing inflorescences (1-1.5 cm)47.626448.831648.612953.7835
ROORoots from the seedlings (10 cm shoot stage)83.491779.571359.917198.8934
NODDeveloping tillers at six leaf stage, 3rd internode39.436444.21858.6097157.357
CAR5Developing grain, bracts removed (5 DPA)90.709394.918492.288492.987
CAR15Developing grain, bracts removed (15 DPA)34.994335.377934.980480.7622



CDS Structure of MLOC_57298






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_57298.2
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
AK249198.1NoneNoneNoneNone
MLOC_57298.2CUST_3744_PI427708080AvailableAvailablecontig_41619 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os06g48750.2 +1 0.0 806 405/412 (98%) 13106.m05188 protein DEAD-box ATP-dependent RNA helicase, putative, expressed
TAIR PP10 AT3G13920.1 +1 0.0 758 379/412 (92%) | Symbols: EIF4A1, RH4, TIF4A1 | eukaryotic translation initiation factor 4A1 | chr3:4592635-4594128 REVERSE LENGTH=412