MLOC_57296 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains0.2213710.143870.07296780.151222
LEAShoots from the seedlings (10 cm shoot stage)0.8051260.5654340.485610.527813
INF1Young developing inflorescences (5mm)0.757470.9690340.950.841615
INF2Developing inflorescences (1-1.5 cm)0.4309440.411660.7054470.573923
ROORoots from the seedlings (10 cm shoot stage)4.479711.416072.703322.23616
NODDeveloping tillers at six leaf stage, 3rd internode0.4686210.1138190.05089740.277147
CAR5Developing grain, bracts removed (5 DPA)0.5914420.2157140.2417220.348728
CAR15Developing grain, bracts removed (15 DPA)5.01163.976273.1922710.7396



CDS Structure of MLOC_57296






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_57296.2
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
MLOC_57296.2CUST_13670_PI427708080AvailableAvailablecontig_41613 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os02g48570.1 +1 0.0 925 530/586 (90%) 13102.m05495 protein peptide transporter PTR2, putative, expressed
TAIR PP10 AT1G32450.1 +1 0.0 609 348/572 (61%) | Symbols: NRT1.5 | nitrate transporter 1.5 | chr1:11715337-11719807 REVERSE LENGTH=614