MLOC_57289 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains1.999781.280951.338551.57411
LEAShoots from the seedlings (10 cm shoot stage)14.997825.187939.495123.1601
INF1Young developing inflorescences (5mm)1.508491.456131.563131.46038
INF2Developing inflorescences (1-1.5 cm)0.6453580.6823320.8831820.90379
ROORoots from the seedlings (10 cm shoot stage)0.2254840.1274650.8118350.281657
NODDeveloping tillers at six leaf stage, 3rd internode4.725998.3000310.835626.8078
CAR5Developing grain, bracts removed (5 DPA)4.824647.16895.286496.64699
CAR15Developing grain, bracts removed (15 DPA)0.5332770.6715650.97031.92508



CDS Structure of MLOC_57289






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_57289.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
AK253082.1NoneNoneNoneNone
MLOC_57289.1CUST_3741_PI427708080AvailableAvailablecontig_41608 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os05g41190.1 +3 1e-64 205 108/170 (64%) 13105.m04368 protein expressed protein
TAIR PP10 AT3G51510.1 +3 2e-50 167 76/118 (64%) unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast thylakoid membrane, chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; Has 42 Blast hits to 42 proteins in 19 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 40; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink). | chr3:19109118-19109842 FORWARD LENGTH=181