MLOC_57282 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains17.098522.953924.648319.8661
LEAShoots from the seedlings (10 cm shoot stage)17.611617.434418.642414.4495
INF1Young developing inflorescences (5mm)46.417248.267550.266936.087
INF2Developing inflorescences (1-1.5 cm)45.163754.119153.370348.9465
ROORoots from the seedlings (10 cm shoot stage)17.189821.985819.744323.0403
NODDeveloping tillers at six leaf stage, 3rd internode11.255613.995817.641445.8503
CAR5Developing grain, bracts removed (5 DPA)27.085225.367626.997922.1141
CAR15Developing grain, bracts removed (15 DPA)21.243118.744818.496839.8776



CDS Structure of MLOC_57282






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_57282.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
MLOC_57282.1CUST_17757_PI427708080AvailableAvailablecontig_41602 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os09g03610.4 +2 0.0 645 324/407 (80%) 13109.m00283 protein flowering time control protein FCA, putative, expressed
TAIR PP10 AT4G16280.3 +2 3e-104 338 195/411 (47%) | Symbols: FCA | RNA binding;abscisic acid binding | chr4:9208564-9214412 REVERSE LENGTH=533