MLOC_57271 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains28.382233.487130.934235.1467
LEAShoots from the seedlings (10 cm shoot stage)23.403716.400615.774616.0273
INF1Young developing inflorescences (5mm)63.509371.494470.967264.7005
INF2Developing inflorescences (1-1.5 cm)81.813779.68772.686994.8387
ROORoots from the seedlings (10 cm shoot stage)24.021124.235424.389330.4085
NODDeveloping tillers at six leaf stage, 3rd internode24.803730.275729.426493.6577
CAR5Developing grain, bracts removed (5 DPA)36.98738.451234.755339.9305
CAR15Developing grain, bracts removed (15 DPA)4.826623.579564.4890511.2175



CDS Structure of MLOC_57271






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_57271.2
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
AK362319NoneNoneNoneNone
MLOC_57271.2CUST_3735_PI427708080AvailableAvailablecontig_41587 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os02g47640.1 -3 0.0 625 365/431 (85%) 13102.m05373 protein OsFBT4 - F-box and tubby domain containing protein, expressed
TAIR PP10 AT2G18280.2 -3 2e-123 378 240/430 (56%) | Symbols: AtTLP2, TLP2 | tubby like protein 2 | chr2:7946754-7948176 FORWARD LENGTH=394