MLOC_57269 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains1.488262.074681.993041.56273
LEAShoots from the seedlings (10 cm shoot stage)3.799411.89692.484242.19859
INF1Young developing inflorescences (5mm)0.3532250.3830880.4993710.337984
INF2Developing inflorescences (1-1.5 cm)0.7389220.7026680.8373590.806515
ROORoots from the seedlings (10 cm shoot stage)1.507542.039322.624662.01889
NODDeveloping tillers at six leaf stage, 3rd internode22.72058.266217.3974121.1748
CAR5Developing grain, bracts removed (5 DPA)0.2188290.3145780.1237690.210835
CAR15Developing grain, bracts removed (15 DPA)0.09950790.08473430.05933680.18895



CDS Structure of MLOC_57269






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_57269.2
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
AK360238NoneNoneNoneNone
MLOC_57269.2CUST_3733_PI427708080AvailableAvailablecontig_41587 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os02g47660.1 +1 4e-73 253 202/361 (56%) 13102.m05375 protein basic helix-loop-helix, putative, expressed
TAIR PP10 AT4G34530.1 +1 4e-30 125 74/99 (75%) | Symbols: CIB1 | cryptochrome-interacting basic-helix-loop-helix 1 | chr4:16498466-16499946 FORWARD LENGTH=335