MLOC_57260 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains22.79520.052917.65717.44
LEAShoots from the seedlings (10 cm shoot stage)19.56273.741744.502616.87881
INF1Young developing inflorescences (5mm)17.538624.057922.732917.5478
INF2Developing inflorescences (1-1.5 cm)7.9615411.50948.6207310.05
ROORoots from the seedlings (10 cm shoot stage)12.819312.352813.013211.0792
NODDeveloping tillers at six leaf stage, 3rd internode12.05178.977240.82613.9127
CAR5Developing grain, bracts removed (5 DPA)23.294425.64221.474621.811
CAR15Developing grain, bracts removed (15 DPA)0.8382070.7708210.5280161.83141



CDS Structure of MLOC_57260






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_57260.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
AK248372.1NoneNoneNoneNone
MLOC_57260.1CUST_3732_PI427708080AvailableAvailablecontig_41580 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os08g41290.1 +1 6e-87 271 133/162 (82%) 13108.m04431 protein AIR12, putative, expressed
TAIR PP10 AT3G07390.1 +1 1e-39 145 73/148 (49%) | Symbols: AIR12 | auxin-responsive family protein | chr3:2365452-2366273 FORWARD LENGTH=273