MLOC_57234 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains0.1103670.14314900.188697
LEAShoots from the seedlings (10 cm shoot stage)1.555294.109015.453963.44143
INF1Young developing inflorescences (5mm)0.03978920.08976910.04968660.0602953
INF2Developing inflorescences (1-1.5 cm)0.166596000.207717
ROORoots from the seedlings (10 cm shoot stage)1.529391.93120.6818512.26588
NODDeveloping tillers at six leaf stage, 3rd internode0.1018180.1514950.01402330.402882
CAR5Developing grain, bracts removed (5 DPA)11.245716.029815.287615.7281
CAR15Developing grain, bracts removed (15 DPA)3.593315.946694.151612.7102



CDS Structure of MLOC_57234






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_57234.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
MLOC_57234.1CUST_13658_PI427708080AvailableAvailablecontig_41542 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os04g43200.1 -3 6e-125 362 186/242 (77%) 13104.m04283 protein caleosin related protein, putative, expressed
TAIR PP10 AT4G26740.1 -3 2e-96 289 140/224 (63%) | Symbols: ATS1, CLO1, ATPXG1 | seed gene 1 | chr4:13473791-13475278 REVERSE LENGTH=245