MLOC_57231 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains12.700110.451210.37410.5264
LEAShoots from the seedlings (10 cm shoot stage)8.97999.707729.311337.27254
INF1Young developing inflorescences (5mm)0.1050050.2814710.4873560.222523
INF2Developing inflorescences (1-1.5 cm)0.1553320.1117240.3237280.182971
ROORoots from the seedlings (10 cm shoot stage)46.647946.75841.391149.5549
NODDeveloping tillers at six leaf stage, 3rd internode108.053128.328198.965402.151
CAR5Developing grain, bracts removed (5 DPA)2.730492.80893.351482.72796
CAR15Developing grain, bracts removed (15 DPA)3.588073.717523.139258.17006



CDS Structure of MLOC_57231






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_57231.2
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
AK366514NoneNoneNoneNone
MLOC_57231.2CUST_18155_PI427708080AvailableAvailablecontig_41539 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os04g54800.1 -1 6e-140 418 227/301 (75%) 13104.m05672 protein shikimate kinase, putative, expressed
TAIR PP10 AT2G21940.5 -1 3e-79 259 132/221 (60%) | Symbols: SK1, ATSK1 | shikimate kinase 1 | chr2:9351106-9352881 FORWARD LENGTH=303