MLOC_57229 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains3.241532.222272.665492.68834
LEAShoots from the seedlings (10 cm shoot stage)0.4356990.1113510.03763790.158125
INF1Young developing inflorescences (5mm)2.215051.019551.91831.57659
INF2Developing inflorescences (1-1.5 cm)0.06765220.04737210.0387930.0665053
ROORoots from the seedlings (10 cm shoot stage)3.245961.727531.568882.21394
NODDeveloping tillers at six leaf stage, 3rd internode10.01912.63410.1351664.66093
CAR5Developing grain, bracts removed (5 DPA)1.792321.06361.004521.38525
CAR15Developing grain, bracts removed (15 DPA)0.1142310.09055150.01821570.219044



CDS Structure of MLOC_57229






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_57229.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
AK354246NoneNoneNoneNone
MLOC_57229.1CUST_18154_PI427708080AvailableAvailablecontig_41539 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os07g45260.1 -1 1e-160 473 255/328 (78%) 13107.m04767 protein glycosyl transferase 8 domain containing protein, putative, expressed
TAIR PP10 AT3G06260.1 -1 3e-137 411 206/310 (66%) | Symbols: GATL4 | galacturonosyltransferase-like 4 | chr3:1893804-1894859 REVERSE LENGTH=351