MLOC_57173 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains37.509526.273822.436328.8332
LEAShoots from the seedlings (10 cm shoot stage)13.84984.32238.313236.83952
INF1Young developing inflorescences (5mm)51.236956.998445.923849.1742
INF2Developing inflorescences (1-1.5 cm)36.428537.020436.222644.1693
ROORoots from the seedlings (10 cm shoot stage)26.864322.343520.066624.9275
NODDeveloping tillers at six leaf stage, 3rd internode1.451971.980266.643727.90543
CAR5Developing grain, bracts removed (5 DPA)25.758528.333725.190528.3516
CAR15Developing grain, bracts removed (15 DPA)5.878576.092084.9227615.2657



CDS Structure of MLOC_57173






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_57173.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
AK365706NoneNoneNoneNone
MLOC_57173.1CUST_3715_PI427708080AvailableAvailablecontig_41485 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os07g07220.1 -3 2e-57 192 155/167 (93%) 13107.m00698 protein LSM domain containing protein, expressed
TAIR PP10 AT4G20440.4 -3 2e-43 154 121/164 (74%) small nuclear ribonucleoprotein associated protein B | chr4:11022843-11023616 REVERSE LENGTH=257