MLOC_57152 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains56.366944.512644.184353.9277
LEAShoots from the seedlings (10 cm shoot stage)19.388611.532611.763113.2672
INF1Young developing inflorescences (5mm)29.649126.103323.314126.3066
INF2Developing inflorescences (1-1.5 cm)21.79423.320121.996328.9835
ROORoots from the seedlings (10 cm shoot stage)29.31536.402137.410151.2103
NODDeveloping tillers at six leaf stage, 3rd internode20.970916.279714.312157.929
CAR5Developing grain, bracts removed (5 DPA)30.162333.575631.341137.9167
CAR15Developing grain, bracts removed (15 DPA)8.950928.955238.9229424.3049



CDS Structure of MLOC_57152






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_57152.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
AK367494NoneNoneNoneNone
MLOC_57152.1CUST_3713_PI427708080AvailableAvailablecontig_41465 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os05g01300.1 -3 4e-61 198 113/168 (67%) 13105.m00055 protein expressed protein
TAIR PP10 AT4G12340.1 -3 9e-27 105 62/167 (37%) copper ion binding | chr4:7321492-7322004 REVERSE LENGTH=170