- Predicted Gene MLOC_57143
MLOC_57143 FPKM values
| FPKM by Treatment | FPKM by Replicate |

| 
|
| Treatment ID | Treatment Description | Rep 1 FPKM | Rep 2 FPKM | Rep 3 FPKM | Treatment FPKM |
|---|
| EMB | 4-day embryos dissected from germinating grains | 121.262 | 91.8881 | 88.599 | 91.2418 |
| LEA | Shoots from the seedlings (10 cm shoot stage) | 46.9941 | 6.4269 | 6.83149 | 15.7534 |
| INF1 | Young developing inflorescences (5mm) | 203.816 | 201.35 | 183.743 | 169.346 |
| INF2 | Developing inflorescences (1-1.5 cm) | 137.17 | 176.482 | 169.257 | 178.09 |
| ROO | Roots from the seedlings (10 cm shoot stage) | 54.8874 | 73.1631 | 83.9388 | 71.8726 |
| NOD | Developing tillers at six leaf stage, 3rd internode | 4.35952 | 3.42487 | 0.436605 | 6.29355 |
| CAR5 | Developing grain, bracts removed (5 DPA) | 79.8709 | 90.7621 | 77.7409 | 83.43 |
| CAR15 | Developing grain, bracts removed (15 DPA) | 7.39243 | 7.11214 | 9.14408 | 18.9203 |
CDS Structure of MLOC_57143
Members of Gene Cluster
This cluster has a confidence assignment of
High Confidence.
The gene has a transcript that is part of a cluster represented by
MLOC_57143.1
Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)
| Database | Hit | Frame | E-value | Score | % Identity | Description |
|---|
| Rice PP6 |
LOC_Os12g34510.1 |
+2 |
1e-54 |
177 |
112/120 (93%) |
13112.m03522 protein Core histone H2A/H2B/H3/H4 domain containing protein, putative, expressed |
| TAIR PP10 |
AT1G54690.1 |
+2 |
3e-55 |
178 |
111/120 (93%) |
| Symbols: HTA3, H2AXB, G-H2AX, GAMMA-H2AX | gamma histone variant H2AX | chr1:20414607-20415206 REVERSE LENGTH=142 |