MLOC_57143 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains121.26291.888188.59991.2418
LEAShoots from the seedlings (10 cm shoot stage)46.99416.42696.8314915.7534
INF1Young developing inflorescences (5mm)203.816201.35183.743169.346
INF2Developing inflorescences (1-1.5 cm)137.17176.482169.257178.09
ROORoots from the seedlings (10 cm shoot stage)54.887473.163183.938871.8726
NODDeveloping tillers at six leaf stage, 3rd internode4.359523.424870.4366056.29355
CAR5Developing grain, bracts removed (5 DPA)79.870990.762177.740983.43
CAR15Developing grain, bracts removed (15 DPA)7.392437.112149.1440818.9203



CDS Structure of MLOC_57143






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_57143.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
MLOC_57143.1CUST_13642_PI427708080AvailableAvailablecontig_414576 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os12g34510.1 +2 1e-54 177 112/120 (93%) 13112.m03522 protein Core histone H2A/H2B/H3/H4 domain containing protein, putative, expressed
TAIR PP10 AT1G54690.1 +2 3e-55 178 111/120 (93%) | Symbols: HTA3, H2AXB, G-H2AX, GAMMA-H2AX | gamma histone variant H2AX | chr1:20414607-20415206 REVERSE LENGTH=142