MLOC_57142 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains2.603112.411252.188722.56345
LEAShoots from the seedlings (10 cm shoot stage)5.481659.2276512.39978.05104
INF1Young developing inflorescences (5mm)0.9988081.86781.479621.38727
INF2Developing inflorescences (1-1.5 cm)1.738671.659642.130942.16007
ROORoots from the seedlings (10 cm shoot stage)4.871843.947794.648065.38715
NODDeveloping tillers at six leaf stage, 3rd internode3.219463.317856.2137113.0144
CAR5Developing grain, bracts removed (5 DPA)1.108381.533160.98861.37414
CAR15Developing grain, bracts removed (15 DPA)0.5200220.3081050.4434541.08284



CDS Structure of MLOC_57142






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_57142.7
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
AK376700NoneNoneNoneNone
MLOC_57142.7CUST_3708_PI427708080AvailableAvailablecontig_41456 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os03g52450.1 -2 2e-120 355 205/271 (76%) 13103.m05712 protein GATA transcription factor 25, putative, expressed
TAIR PP10 AT1G51600.2 -2 6e-46 162 98/215 (46%) | Symbols: ZML2, TIFY2A, GATA28 | ZIM-LIKE 2 | chr1:19133176-19135252 FORWARD LENGTH=302