MLOC_57126 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains0000
LEAShoots from the seedlings (10 cm shoot stage)0.491148000.493203
INF1Young developing inflorescences (5mm)0000
INF2Developing inflorescences (1-1.5 cm)0000
ROORoots from the seedlings (10 cm shoot stage)0000
NODDeveloping tillers at six leaf stage, 3rd internode0.04468400.01669440.0265766
CAR5Developing grain, bracts removed (5 DPA)4.883645.358733.470054.3541
CAR15Developing grain, bracts removed (15 DPA)00.1670440.2326220.407991



CDS Structure of MLOC_57126






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_57126.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
MLOC_57126.1CUST_13637_PI427708080AvailableAvailablecontig_41445 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os06g22030.1 +3 2e-36 137 71/131 (54%) 13106.m02362 protein AT hook motif domain containing protein, expressed
TAIR PP10 AT5G51590.1 +3 6e-31 121 59/124 (48%) AT hook motif DNA-binding family protein | chr5:20956863-20958929 REVERSE LENGTH=419