MLOC_57116 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains4.066398.182567.633136.61996
LEAShoots from the seedlings (10 cm shoot stage)7.937184.231084.344594.66789
INF1Young developing inflorescences (5mm)16.68417.733419.954214.1558
INF2Developing inflorescences (1-1.5 cm)26.185226.339724.580326.9589
ROORoots from the seedlings (10 cm shoot stage)2.599684.703683.492274.81881
NODDeveloping tillers at six leaf stage, 3rd internode3.491626.252675.3634818.9476
CAR5Developing grain, bracts removed (5 DPA)11.769912.664313.007211.5919
CAR15Developing grain, bracts removed (15 DPA)8.344597.944498.7014717.2214



CDS Structure of MLOC_57116






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_57116.2
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
MLOC_57116.2CUST_13634_PI427708080AvailableAvailablecontig_41434 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os12g29710.1 -3 5e-162 525 365/828 (44%) 13112.m03024 protein NBS-LRR disease resistance protein, putative
TAIR PP10 AT5G23880.1 -1 4e-17 84 45/85 (53%) | Symbols: EMB1265, CPSF100, ESP5, ATCPSF100 | cleavage and polyadenylation specificity factor 100 | chr5:8052550-8058147 FORWARD LENGTH=739