- Predicted Gene MLOC_57116
MLOC_57116 FPKM values
FPKM by Treatment | FPKM by Replicate |
![](/morexGenes/blast_net_images/MLOC_57116_assembly3_WGSMorex_rbca.fasta_treatments.fpkms.png)
| ![](/morexGenes/blast_net_images/MLOC_57116_assembly3_WGSMorex_rbca.fasta_replicates.fpkms.png)
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Treatment ID | Treatment Description | Rep 1 FPKM | Rep 2 FPKM | Rep 3 FPKM | Treatment FPKM |
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EMB | 4-day embryos dissected from germinating grains | 4.06639 | 8.18256 | 7.63313 | 6.61996 |
LEA | Shoots from the seedlings (10 cm shoot stage) | 7.93718 | 4.23108 | 4.34459 | 4.66789 |
INF1 | Young developing inflorescences (5mm) | 16.684 | 17.7334 | 19.9542 | 14.1558 |
INF2 | Developing inflorescences (1-1.5 cm) | 26.1852 | 26.3397 | 24.5803 | 26.9589 |
ROO | Roots from the seedlings (10 cm shoot stage) | 2.59968 | 4.70368 | 3.49227 | 4.81881 |
NOD | Developing tillers at six leaf stage, 3rd internode | 3.49162 | 6.25267 | 5.36348 | 18.9476 |
CAR5 | Developing grain, bracts removed (5 DPA) | 11.7699 | 12.6643 | 13.0072 | 11.5919 |
CAR15 | Developing grain, bracts removed (15 DPA) | 8.34459 | 7.94449 | 8.70147 | 17.2214 |
CDS Structure of MLOC_57116
Members of Gene Cluster
This cluster has a confidence assignment of
High Confidence.
The gene has a transcript that is part of a cluster represented by
MLOC_57116.2
Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)
Database | Hit | Frame | E-value | Score | % Identity | Description |
---|
Rice PP6 |
LOC_Os12g29710.1 |
-3 |
5e-162 |
525 |
365/828 (44%) |
13112.m03024 protein NBS-LRR disease resistance protein, putative |
TAIR PP10 |
AT5G23880.1 |
-1 |
4e-17 |
84 |
45/85 (53%) |
| Symbols: EMB1265, CPSF100, ESP5, ATCPSF100 | cleavage and polyadenylation specificity factor 100 | chr5:8052550-8058147 FORWARD LENGTH=739 |