MLOC_57109 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains2.670084.747184.549343.63055
LEAShoots from the seedlings (10 cm shoot stage)7.322827.258927.257985.79515
INF1Young developing inflorescences (5mm)13.707812.5612.23149.47939
INF2Developing inflorescences (1-1.5 cm)14.687914.495113.611814.0472
ROORoots from the seedlings (10 cm shoot stage)2.282044.825613.648314.73725
NODDeveloping tillers at six leaf stage, 3rd internode2.070093.434464.1013711.4545
CAR5Developing grain, bracts removed (5 DPA)8.199736.974747.955676.56001
CAR15Developing grain, bracts removed (15 DPA)3.751093.458533.085536.94962



CDS Structure of MLOC_57109






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_57109.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
MLOC_57109.1CUST_13632_PI427708080AvailableAvailablecontig_41432 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os03g05690.1 +2 5e-135 437 306/751 (41%) 13103.m00614 protein ZOS3-03 - C2H2 zinc finger protein, expressed
TAIR PP10 AT5G04240.1 +2 5e-74 272 235/826 (28%) | Symbols: ELF6 | Zinc finger (C2H2 type) family protein / transcription factor jumonji (jmj) family protein | chr5:1169544-1174638 FORWARD LENGTH=1340