MLOC_57101 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains0.6512670.6811120.4648590.641675
LEAShoots from the seedlings (10 cm shoot stage)0000
INF1Young developing inflorescences (5mm)0000
INF2Developing inflorescences (1-1.5 cm)0000
ROORoots from the seedlings (10 cm shoot stage)00.2444070.1948190.411448
NODDeveloping tillers at six leaf stage, 3rd internode0000
CAR5Developing grain, bracts removed (5 DPA)0000
CAR15Developing grain, bracts removed (15 DPA)0000



CDS Structure of MLOC_57101






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_57101.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
MLOC_57101.1CUST_13631_PI427708080AvailableAvailablecontig_41421 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os05g49540.1 +2 1e-32 129 86/199 (43%) 13105.m05302 protein retrotransposon protein, putative, Ty1-copia subclass
TAIR PP10 AT5G52610.1 +2 5e-12 65 48/178 (27%) F-box and associated interaction domains-containing protein | chr5:21346423-21347478 REVERSE LENGTH=351