MLOC_57100 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains195.221186.425192.188198.293
LEAShoots from the seedlings (10 cm shoot stage)0.4358550.4453210.4753190.393581
INF1Young developing inflorescences (5mm)0.05567980.031731100.0423664
INF2Developing inflorescences (1-1.5 cm)0.05781410.027633400.0596069
ROORoots from the seedlings (10 cm shoot stage)77.072850.37431.977261.6482
NODDeveloping tillers at six leaf stage, 3rd internode3.695238.4422414.911929.7957
CAR5Developing grain, bracts removed (5 DPA)7.329277.548855.509357.16616
CAR15Developing grain, bracts removed (15 DPA)0.0278560.1584720.08068380.241222



CDS Structure of MLOC_57100






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_57100.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
MLOC_57100.1CUST_13630_PI427708080AvailableAvailablecontig_41421 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os08g06100.1 +1 0.0 519 279/359 (78%) 13108.m00605 protein O-methyltransferase, putative, expressed
TAIR PP10 AT5G54160.1 +1 4e-139 407 215/348 (62%) | Symbols: ATOMT1, OMT1 | O-methyltransferase 1 | chr5:21982075-21984167 FORWARD LENGTH=363