MLOC_5710 FPKM values
| FPKM by Treatment | FPKM by Replicate |
|---|
| 
|
| Treatment ID | Treatment Description | Rep 1 FPKM | Rep 2 FPKM | Rep 3 FPKM | Treatment FPKM |
|---|
| EMB | 4-day embryos dissected from germinating grains | 1.89565 | 0.439499 | 0.856876 | 0.832607 |
| LEA | Shoots from the seedlings (10 cm shoot stage) | 1.33341 | 1.32396 | 0.505486 | 0.73161 |
| INF1 | Young developing inflorescences (5mm) | 0.342115 | 1.17862 | 0.51318 | 0.559187 |
| INF2 | Developing inflorescences (1-1.5 cm) | 0.136095 | 0.137135 | 0.15978 | 0.150819 |
| ROO | Roots from the seedlings (10 cm shoot stage) | 8.75152 | 3.00628 | 4.03384 | 3.64911 |
| NOD | Developing tillers at six leaf stage, 3rd internode | 17.8117 | 28.83 | 48.7347 | 71.161 |
| CAR5 | Developing grain, bracts removed (5 DPA) | 2.15724 | 2.48876 | 2.3499 | 2.15781 |
| CAR15 | Developing grain, bracts removed (15 DPA) | 0.272538 | 0.140796 | 0.228132 | 0.515795 |
CDS Structure of MLOC_5710
Members of Gene Cluster
This cluster has a confidence assignment of
High Confidence.
The gene has a transcript that is part of a cluster represented by
MLOC_5710.1
Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)
| Database | Hit | Frame | E-value | Score | % Identity | Description |
|---|
| Rice PP6 |
LOC_Os05g39500.1 |
+3 |
2e-77 |
248 |
131/134 (98%) |
13105.m04164 protein DUF640 domain containing protein, putative, expressed |
| TAIR PP10 |
AT1G07090.1 |
+3 |
4e-68 |
221 |
111/134 (83%) |
| Symbols: LSH6 | Protein of unknown function (DUF640) | chr1:2174202-2174792 REVERSE LENGTH=196 |
