- Predicted Gene MLOC_57084
MLOC_57084 FPKM values
| FPKM by Treatment | FPKM by Replicate |
|---|
| 
|
| Treatment ID | Treatment Description | Rep 1 FPKM | Rep 2 FPKM | Rep 3 FPKM | Treatment FPKM |
|---|
| EMB | 4-day embryos dissected from germinating grains | 10.9606 | 6.9513 | 7.15677 | 8.50283 |
| LEA | Shoots from the seedlings (10 cm shoot stage) | 4.42177 | 3.01469 | 3.84744 | 3.19596 |
| INF1 | Young developing inflorescences (5mm) | 23.2422 | 27.947 | 29.0223 | 24.2904 |
| INF2 | Developing inflorescences (1-1.5 cm) | 17.9673 | 25.5671 | 17.5831 | 25.3498 |
| ROO | Roots from the seedlings (10 cm shoot stage) | 3.34306 | 4.7457 | 3.65997 | 5.50128 |
| NOD | Developing tillers at six leaf stage, 3rd internode | 0.681388 | 1.44498 | 1.39097 | 4.24676 |
| CAR5 | Developing grain, bracts removed (5 DPA) | 6.07963 | 6.42846 | 6.75409 | 6.97611 |
| CAR15 | Developing grain, bracts removed (15 DPA) | 0.42876 | 0.217551 | 0.564583 | 0.993782 |
CDS Structure of MLOC_57084
Members of Gene Cluster
This cluster has a confidence assignment of
High Confidence.
The gene has a transcript that is part of a cluster represented by
MLOC_57084.5
Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)
| Database | Hit | Frame | E-value | Score | % Identity | Description |
|---|
| Rice PP6 |
LOC_Os03g45760.1 |
-3 |
8e-159 |
459 |
293/345 (85%) |
13103.m04921 protein expressed protein |
| TAIR PP10 |
AT1G16520.1 |
-3 |
7e-89 |
279 |
175/329 (53%) |
unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G56080.1); Has 243 Blast hits to 234 proteins in 69 species: Archae - 2; Bacteria - 2; Metazoa - 61; Fungi - 9; Plants - 125; Viruses - 0; Other Eukaryotes - 44 (source: NCBI BLink). | chr1:5648904-5650998 FORWARD LENGTH=325 |
