MLOC_57082 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains0.5952530.2491450.2937770.365031
LEAShoots from the seedlings (10 cm shoot stage)0.3437710.05696680.3399580.206613
INF1Young developing inflorescences (5mm)0.4378670.4246090.276810.350723
INF2Developing inflorescences (1-1.5 cm)0.3714550.5486540.3779460.524438
ROORoots from the seedlings (10 cm shoot stage)0.2747840.3353790.501370.422892
NODDeveloping tillers at six leaf stage, 3rd internode2.279442.044343.816047.13178
CAR5Developing grain, bracts removed (5 DPA)0.03142330.08959860.06052310.06663
CAR15Developing grain, bracts removed (15 DPA)000.06002350.0463808



CDS Structure of MLOC_57082






Members of Gene Cluster

This cluster has a confidence assignment of non-High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_57082.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
MLOC_57082.1CUST_7877_PI427708083AvailableAvailablecontig_41408 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os03g45750.1 +2 1e-59 199 95/107 (89%) 13103.m04920 protein DUF260 domain containing protein, putative, expressed
TAIR PP10 AT1G31320.1 +2 4e-51 174 80/107 (75%) | Symbols: LBD4 | LOB domain-containing protein 4 | chr1:11213107-11214032 FORWARD LENGTH=172