MLOC_57081 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains5.419064.70024.940044.86682
LEAShoots from the seedlings (10 cm shoot stage)33.362445.186553.349334.1926
INF1Young developing inflorescences (5mm)2.320482.517913.450652.53386
INF2Developing inflorescences (1-1.5 cm)1.679961.962361.658882.11671
ROORoots from the seedlings (10 cm shoot stage)0.1006540.3371891.044850.455888
NODDeveloping tillers at six leaf stage, 3rd internode8.0967311.558717.252533.3383
CAR5Developing grain, bracts removed (5 DPA)10.728712.692412.321212.6538
CAR15Developing grain, bracts removed (15 DPA)0.7007730.7243130.6085741.79265



CDS Structure of MLOC_57081






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_57081.2
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
AK355189NoneNoneNoneNone
MLOC_57081.2CUST_3698_PI427708080AvailableAvailablecontig_41406 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os07g41630.1 +3 3e-51 173 98/174 (56%) 13107.m04337 protein hypothetical protein
TAIR PP10 AT4G16410.1 +3 1e-36 133 60/104 (58%) unknown protein; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF751 (InterPro:IPR008470); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). | chr4:9262019-9262576 REVERSE LENGTH=185