MLOC_57069 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains4.335023.869644.583633.32318
LEAShoots from the seedlings (10 cm shoot stage)15.364922.499830.062615.2376
INF1Young developing inflorescences (5mm)6.762597.335919.383834.9331
INF2Developing inflorescences (1-1.5 cm)6.985526.500446.832935.91847
ROORoots from the seedlings (10 cm shoot stage)3.546653.534092.890423.30702
NODDeveloping tillers at six leaf stage, 3rd internode3.385114.259236.4736112.4636
CAR5Developing grain, bracts removed (5 DPA)7.223166.523156.175434.98863
CAR15Developing grain, bracts removed (15 DPA)1.543541.907212.373743.09135



CDS Structure of MLOC_57069






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_57069.4
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
MLOC_57069.4CUST_13626_PI427708080AvailableAvailablecontig_41395 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os04g20990.1 +3 0.0 591 287/329 (87%) 13104.m01936 protein tRNA-dihydrouridine synthase, putative, expressed
TAIR PP10 AT3G63510.2 +3 3e-151 445 206/312 (66%) FMN-linked oxidoreductases superfamily protein | chr3:23450615-23452682 FORWARD LENGTH=386