- Predicted Gene MLOC_57061
MLOC_57061 FPKM values
| FPKM by Treatment | FPKM by Replicate |
|---|
| 
|
| Treatment ID | Treatment Description | Rep 1 FPKM | Rep 2 FPKM | Rep 3 FPKM | Treatment FPKM |
|---|
| EMB | 4-day embryos dissected from germinating grains | 25.6562 | 38.7166 | 35.7739 | 33.7794 |
| LEA | Shoots from the seedlings (10 cm shoot stage) | 1129.66 | 1991.83 | 1964.1 | 1288.05 |
| INF1 | Young developing inflorescences (5mm) | 42.7483 | 26.4331 | 22.4174 | 26.6846 |
| INF2 | Developing inflorescences (1-1.5 cm) | 23.9041 | 24.6988 | 32.0827 | 29.7392 |
| ROO | Roots from the seedlings (10 cm shoot stage) | 3.87182 | 13.6473 | 33.849 | 15.7552 |
| NOD | Developing tillers at six leaf stage, 3rd internode | 574.509 | 603.066 | 1019.16 | 1770.47 |
| CAR5 | Developing grain, bracts removed (5 DPA) | 378.48 | 408.817 | 386.855 | 397.833 |
| CAR15 | Developing grain, bracts removed (15 DPA) | 37.1453 | 52.8535 | 42.1492 | 108.552 |
CDS Structure of MLOC_57061
Members of Gene Cluster
This cluster has a confidence assignment of
High Confidence.
The gene has a transcript that is part of a cluster represented by
MLOC_57061.1
Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)
| Database | Hit | Frame | E-value | Score | % Identity | Description |
|---|
| Rice PP6 |
LOC_Os11g13890.1 |
+3 |
4e-163 |
465 |
253/285 (89%) |
13111.m01414 protein chlorophyll A-B binding protein, putative, expressed |
| TAIR PP10 |
AT4G10340.1 |
+3 |
2e-141 |
409 |
220/285 (77%) |
| Symbols: LHCB5 | light harvesting complex of photosystem II 5 | chr4:6408200-6409496 FORWARD LENGTH=280 |
