MLOC_57042 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains6.988366.864086.155037.83704
LEAShoots from the seedlings (10 cm shoot stage)17.716526.411431.578523.5462
INF1Young developing inflorescences (5mm)3.879344.033823.909973.73963
INF2Developing inflorescences (1-1.5 cm)2.569123.002072.69933.52782
ROORoots from the seedlings (10 cm shoot stage)3.99664.201972.907255.76212
NODDeveloping tillers at six leaf stage, 3rd internode9.441327.3247910.530826.2008
CAR5Developing grain, bracts removed (5 DPA)6.62677.723178.037129.0037
CAR15Developing grain, bracts removed (15 DPA)1.874092.328821.582415.34462



CDS Structure of MLOC_57042






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_57042.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
AK357313NoneNoneNoneNone
MLOC_57042.1CUST_3694_PI427708080AvailableAvailablecontig_41372 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os05g08930.1 +2 5e-131 392 204/253 (81%) 13105.m00990 protein chloroplast lumen common family protein, putative, expressed
TAIR PP10 AT4G39470.1 +2 1e-67 224 103/219 (47%) Tetratricopeptide repeat (TPR)-like superfamily protein | chr4:18359735-18361165 REVERSE LENGTH=341