MLOC_57033 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains7.524435.517565.385246.20647
LEAShoots from the seedlings (10 cm shoot stage)4.687944.475875.222983.98393
INF1Young developing inflorescences (5mm)3.999474.510264.007873.7119
INF2Developing inflorescences (1-1.5 cm)6.228984.893675.033036.00417
ROORoots from the seedlings (10 cm shoot stage)6.517725.221525.153526.43708
NODDeveloping tillers at six leaf stage, 3rd internode5.45566.711437.072919.6701
CAR5Developing grain, bracts removed (5 DPA)4.565864.199394.859944.49769
CAR15Developing grain, bracts removed (15 DPA)0.4763480.5632680.9457151.56592



CDS Structure of MLOC_57033






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_57033.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
AK374741NoneNoneNoneNone
MLOC_57033.1CUST_3693_PI427708080AvailableAvailablecontig_41361 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os05g44390.1 +1 2e-84 262 164/204 (80%) 13105.m04695 protein peptidyl-tRNA hydrolase, putative, expressed
TAIR PP10 AT4G32900.2 +1 2e-50 172 85/115 (74%) Peptidyl-tRNA hydrolase II (PTH2) family protein | chr4:15878944-15880979 REVERSE LENGTH=193