MLOC_57021 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains6.8250411.61799.916811.1379
LEAShoots from the seedlings (10 cm shoot stage)37.018681.237374.872459.2966
INF1Young developing inflorescences (5mm)18.880320.743620.607217.892
INF2Developing inflorescences (1-1.5 cm)31.082618.914121.365827.4051
ROORoots from the seedlings (10 cm shoot stage)7.8507712.409111.820515.8065
NODDeveloping tillers at six leaf stage, 3rd internode28.735231.358934.8587111.811
CAR5Developing grain, bracts removed (5 DPA)16.974220.234623.623521.5885
CAR15Developing grain, bracts removed (15 DPA)14.313514.962914.54636.3895



CDS Structure of MLOC_57021






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_57021.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
AK252005.1NoneNoneNoneNone
MLOC_57021.1CUST_3692_PI427708080AvailableAvailablecontig_41351 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os09g36220.2 -2 0.0 729 404/598 (68%) 13109.m07593 protein response regulator receiver domain containing protein, expressed
TAIR PP10 AT5G24470.1 -2 3e-83 283 212/582 (36%) | Symbols: APRR5, PRR5 | pseudo-response regulator 5 | chr5:8356204-8358873 REVERSE LENGTH=667