MLOC_57016 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains2.099432.341512.434632.19246
LEAShoots from the seedlings (10 cm shoot stage)1.46430.7420470.7629810.845737
INF1Young developing inflorescences (5mm)2.1661.553491.562931.41798
INF2Developing inflorescences (1-1.5 cm)1.302811.920861.561581.67373
ROORoots from the seedlings (10 cm shoot stage)2.390522.266172.052912.63881
NODDeveloping tillers at six leaf stage, 3rd internode13.40126.495720.071099817.6269
CAR5Developing grain, bracts removed (5 DPA)0.8250510.7728090.7407020.719928
CAR15Developing grain, bracts removed (15 DPA)0.2496790.2460560.1836810.515227



CDS Structure of MLOC_57016






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_57016.2
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
MLOC_57016.2CUST_17755_PI427708080AvailableAvailablecontig_41348 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os02g57340.1 +2 0.0 607 377/550 (69%) 13102.m06608 protein tetratricopeptide-like helical, putative, expressed
TAIR PP10 AT2G22410.1 +2 8e-74 259 157/405 (39%) | Symbols: SLO1 | SLOW GROWTH 1 | chr2:9509035-9511080 FORWARD LENGTH=681