MLOC_57001 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains0.04715920.2052860.29660.190963
LEAShoots from the seedlings (10 cm shoot stage)0.07681680.06132620.01267430.0460803
INF1Young developing inflorescences (5mm)1.161971.35951.143121.0381
INF2Developing inflorescences (1-1.5 cm)1.965112.547391.970082.46168
ROORoots from the seedlings (10 cm shoot stage)0.01618240.05223290.02963970.0633844
NODDeveloping tillers at six leaf stage, 3rd internode0.1036520.03475020.02352580.121884
CAR5Developing grain, bracts removed (5 DPA)22.058621.924625.277922.5524
CAR15Developing grain, bracts removed (15 DPA)157.036126.861129.517320.257



CDS Structure of MLOC_57001






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_57001.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
MLOC_57001.1CUST_13613_PI427708080AvailableAvailablecontig_41334 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os08g09230.2 -2 0.0 1558 874/1503 (58%) 13108.m00968 protein starch synthase III, putative, expressed
TAIR PP10 AT1G11720.2 -2 0.0 1148 586/954 (61%) | Symbols: SS3 | starch synthase 3 | chr1:3951597-3956840 FORWARD LENGTH=1094