MLOC_56995 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains1.292731.176531.767151.30847
LEAShoots from the seedlings (10 cm shoot stage)0.9117290.1874620.1749670.35602
INF1Young developing inflorescences (5mm)0.5949151.187220.8121850.797087
INF2Developing inflorescences (1-1.5 cm)1.918912.422992.025442.48685
ROORoots from the seedlings (10 cm shoot stage)1.589251.476691.472871.59953
NODDeveloping tillers at six leaf stage, 3rd internode4.209023.911380.2960988.88112
CAR5Developing grain, bracts removed (5 DPA)3.286913.383183.047783.32893
CAR15Developing grain, bracts removed (15 DPA)12.29099.437819.6491926.8597



CDS Structure of MLOC_56995






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_56995.11
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
AK357349NoneNoneNoneNone
MLOC_56995.11CUST_3689_PI427708080AvailableAvailablecontig_41324 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os01g03100.1 +1 2e-135 401 198/247 (80%) 13101.m00261 protein protein binding protein, putative, expressed
TAIR PP10 AT2G01275.2 +1 2e-72 236 115/234 (49%) RING/FYVE/PHD zinc finger superfamily protein | chr2:142610-143809 REVERSE LENGTH=259