MLOC_56971 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains1.711381.833422.187041.61412
LEAShoots from the seedlings (10 cm shoot stage)1.596441.578181.515141.19801
INF1Young developing inflorescences (5mm)3.726433.233724.22282.70086
INF2Developing inflorescences (1-1.5 cm)5.236265.022365.066664.81426
ROORoots from the seedlings (10 cm shoot stage)4.697756.473557.305146.40069
NODDeveloping tillers at six leaf stage, 3rd internode0.8264861.398991.585894.3085
CAR5Developing grain, bracts removed (5 DPA)2.417841.734891.770581.6247
CAR15Developing grain, bracts removed (15 DPA)3.005364.400273.720727.13434



CDS Structure of MLOC_56971






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_56971.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
MLOC_56971.1CUST_17754_PI427708080AvailableAvailablecontig_41297 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os06g01966.1 +3 2e-148 447 244/363 (67%) 13106.m00108 protein auxin-induced protein 5NG4, putative, expressed
TAIR PP10 AT3G30340.1 +3 9e-83 273 138/327 (42%) nodulin MtN21 /EamA-like transporter family protein | chr3:11956626-11958969 FORWARD LENGTH=364