- Predicted Gene MLOC_56963
MLOC_56963 FPKM values
| FPKM by Treatment | FPKM by Replicate |
|---|
| 
|
| Treatment ID | Treatment Description | Rep 1 FPKM | Rep 2 FPKM | Rep 3 FPKM | Treatment FPKM |
|---|
| EMB | 4-day embryos dissected from germinating grains | 28.8915 | 39.1659 | 34.2743 | 35.7952 |
| LEA | Shoots from the seedlings (10 cm shoot stage) | 67.4126 | 21.7583 | 30.3575 | 31.8652 |
| INF1 | Young developing inflorescences (5mm) | 29.4889 | 21.3821 | 18.0317 | 20.0665 |
| INF2 | Developing inflorescences (1-1.5 cm) | 13.3775 | 15.2714 | 17.0625 | 16.8262 |
| ROO | Roots from the seedlings (10 cm shoot stage) | 53.4722 | 50.8912 | 42.8572 | 55.336 |
| NOD | Developing tillers at six leaf stage, 3rd internode | 80.9114 | 103.536 | 114.762 | 286.541 |
| CAR5 | Developing grain, bracts removed (5 DPA) | 37.516 | 40.0879 | 32.3572 | 36.6885 |
| CAR15 | Developing grain, bracts removed (15 DPA) | 16.1663 | 13.9557 | 13.4448 | 35.9019 |
CDS Structure of MLOC_56963
Members of Gene Cluster
This cluster has a confidence assignment of
High Confidence.
The gene has a transcript that is part of a cluster represented by
MLOC_56963.2
Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)
| Database | Hit | Frame | E-value | Score | % Identity | Description |
|---|
| Rice PP6 |
LOC_Os02g56250.1 |
+2 |
5e-126 |
389 |
281/433 (65%) |
13102.m06462 protein GATA zinc finger domain containing protein, expressed |
| TAIR PP10 |
AT3G54810.1 |
+2 |
2e-33 |
133 |
56/68 (82%) |
| Symbols: BME3-ZF, BME3, GATA8 | Plant-specific GATA-type zinc finger transcription factor family protein | chr3:20296957-20298236 FORWARD LENGTH=322 |
