MLOC_56943 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains0.03281610.05979200.0773317
LEAShoots from the seedlings (10 cm shoot stage)0000
INF1Young developing inflorescences (5mm)0.111764000.105757
INF2Developing inflorescences (1-1.5 cm)0.02739540.050762300.0617563
ROORoots from the seedlings (10 cm shoot stage)00.033503100.184919
NODDeveloping tillers at six leaf stage, 3rd internode0.0489643000.00677632
CAR5Developing grain, bracts removed (5 DPA)0.9283911.40140.9581471.18343
CAR15Developing grain, bracts removed (15 DPA)176.354204.332159.397453.862



CDS Structure of MLOC_56943






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_56943.2
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
MLOC_56943.2CUST_13602_PI427708080AvailableAvailablecontig_41266 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os01g29840.1 -2 6e-74 240 135/270 (50%) 13101.m03094 protein no apical meristem protein, putative, expressed
TAIR PP10 AT5G18270.2 -2 6e-71 231 122/273 (45%) | Symbols: ANAC087 | Arabidopsis NAC domain containing protein 87 | chr5:6041241-6042743 REVERSE LENGTH=335