MLOC_56933 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains54.441638.063835.288244.175
LEAShoots from the seedlings (10 cm shoot stage)10.93771.640012.641054.04517
INF1Young developing inflorescences (5mm)79.931891.956392.640884.9428
INF2Developing inflorescences (1-1.5 cm)58.007982.161159.603384.0813
ROORoots from the seedlings (10 cm shoot stage)22.877220.621225.183524.8951
NODDeveloping tillers at six leaf stage, 3rd internode2.183923.025480.2269065.99359
CAR5Developing grain, bracts removed (5 DPA)22.011526.092228.73328.5448
CAR15Developing grain, bracts removed (15 DPA)1.266510.4910571.694252.86812



CDS Structure of MLOC_56933






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_56933.3
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
AK375195NoneNoneNoneNone
MLOC_56933.3CUST_3683_PI427708080AvailableAvailablecontig_41256 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os01g16650.1 -2 2e-87 267 127/136 (93%) 13101.m01863 protein ubiquitin-conjugating enzyme, putative, expressed
TAIR PP10 AT1G50490.1 -2 5e-71 223 107/137 (78%) | Symbols: UBC20 | ubiquitin-conjugating enzyme 20 | chr1:18705005-18706303 REVERSE LENGTH=180