MLOC_56927 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains2.148883.006372.521362.91175
LEAShoots from the seedlings (10 cm shoot stage)5.244578.786335.759136.32059
INF1Young developing inflorescences (5mm)14.199913.867613.196312.1908
INF2Developing inflorescences (1-1.5 cm)13.150618.332714.162518.6808
ROORoots from the seedlings (10 cm shoot stage)0.8775212.747572.558383.5482
NODDeveloping tillers at six leaf stage, 3rd internode0.04405730.02911440.006694830.110333
CAR5Developing grain, bracts removed (5 DPA)7.218577.05747.740817.89698
CAR15Developing grain, bracts removed (15 DPA)14.585113.929716.45634.6701



CDS Structure of MLOC_56927






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_56927.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
MLOC_56927.1CUST_13601_PI427708080AvailableAvailablecontig_41249 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os05g04530.1 -2 2e-162 473 277/345 (80%) 13105.m00458 protein IF, putative, expressed
TAIR PP10 AT5G26770.1 -2 2e-97 305 180/333 (54%) unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G05830.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). | chr5:9407981-9409735 REVERSE LENGTH=335